Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs55923113 chr1:41553594 C/CAA 6.8E-8 499 27.33 30.48 31.9 KM Plot
THCA rs55925800 chr11:123530129 C/T 1.65E-6 502 31.83 29.37 24.67 KM Plot
THCA rs55930741 chr15:72028980 C/G 4.64E-10 497 31.53 34 20 KM Plot
THCA rs55948254 chr11:88068461 T/C 0 491 31.3 34.87 3.17 KM Plot
THCA rs55957581 chr5:1613726 A/G 2.57E-7 492 31.28 35.33 21.97 KM Plot
THCA rs55959738 chr6:133215578 G/T 2.59E-5 494 31.47 35.72 18.3 KM Plot
THCA rs55964406 chr7:32802914 C/T 0.000102 500 31.45 31.47 32.1 KM Plot
THCA rs55968289 chr3:139260285 C/T 4.64E-5 503 31.5 33.63 19.32 KM Plot
THCA rs55970952 chr7:43956692 C/T 1.56E-9 502 31.15 33.5 31.03 KM Plot
THCA rs55980129 chr11:123528496 A/G 2.61E-5 502 31.87 28.33 26.73 KM Plot
THCA rs55982786 chr19:33375750 C/T 2.87E-5 501 31.43 34.43 32.93 KM Plot
THCA rs55987999 chr3:139268696 C/T 4.83E-5 500 31.53 33.97 19.32 KM Plot
THCA rs55999120 chr10:81617703 T/C 8.34E-10 487 31.7 31.23 14.52 KM Plot
THCA rs55999949 chr13:108899145 T/G 2.3E-6 498 31.4 32.03 24.63 KM Plot
THCA rs56034427 chr3:139260502 T/C 4.64E-5 503 31.5 33.63 19.32 KM Plot